FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index13_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20198926 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4257610 | 2.5859945 | 5.0055103 | 1 |
| CCTGG | 4242645 | 2.5690725 | 5.9936166 | 1 |
| GAAGA | 4222820 | 2.5169702 | 5.000101 | 2 |
| CTTCT | 4378315 | 2.5079103 | 5.3850465 | 1 |
| AAGAA | 4301360 | 2.5011284 | 5.0154743 | 2 |
| CTGGA | 4010020 | 2.405432 | 8.722506 | 1 |
| TCCAG | 3933230 | 2.3235056 | 5.584788 | 2 |
| CTCCT | 3963095 | 2.2985535 | 7.3905644 | 1 |
| CTGGG | 3663535 | 2.252642 | 8.298569 | 1 |
| CAGGA | 3696520 | 2.224138 | 5.5768557 | 1 |
| CTTCA | 3809595 | 2.1887987 | 5.715577 | 1 |
| CCCAG | 3607335 | 2.1577244 | 7.0402327 | 1 |
| CTCCA | 3704230 | 2.1549644 | 7.977386 | 1 |
| CAGAA | 3516080 | 2.063869 | 5.087844 | 1 |
| CTCTG | 3397685 | 2.0010383 | 6.150592 | 1 |
| CTGGC | 3120985 | 1.8898674 | 5.398448 | 1 |
| TGGAA | 3109355 | 1.8476673 | 5.283967 | 2 |
| CTGAA | 3109885 | 1.8198919 | 5.18691 | 1 |
| CTCAG | 2912180 | 1.7203333 | 6.0793915 | 1 |
| CTGGT | 2773570 | 1.658684 | 5.012319 | 1 |
| CTTGG | 2727890 | 1.6313659 | 5.3408146 | 1 |